• Studies On The Relative Contribution Of Different Factors That Influence Codon Usage Patterns In Different Organisms 

  Victor, Manish Prakash (Department of Biophysics, Molecular Biology and Bioinformatics, University of Calcutta, 2019)

  Codon usage bias (CUB) and mRNA structural stability are important intrinsic features of mRNA that correlate positively with mRNA expression level. However, it remains unclear whether the mRNA expression level can be ...

• Role of regulatory RNAs in modulating stem cell biology 

  Sarkar, Arijita, Auth; Ghosh, Zhumur, Supervisor (2018)

• Systematic discovery of linear motifs mediating protein-protein interactions 

  Sarkar, Debasree, Auth; Ghosh, Tapash Chandra, Supervisor (2018)

• Flexibility and Conformational Modulations of Proteins Correlating Apoptosis: Molecular Dynamics Simulations of Bcl2 Family Members 

  Maity, Atanu, Auth; Ghosh Dastidar, Shubhra, Supervisor (2017)

• In-silico studies of micrornas regulation in higher eukaryotes from the perspective of molecular evolution 

  Das, Jyotirmoy, Auth; Ghosh, Tapash Ch., Supervisor (2016)

• Studies on overlapping genes: from evolutionary perspective 

  Saha, Deeya, Auth; Ghosh, Tapash Ch., Supervisor (2017)

• Structural and Genomic Analysis of Human Disease & Non-Disease Genes from the Perspective of Protein Evolution 

  Begum, Tina, Auth; Ghosh, Tapash C., Supervisor (2015)

• Thesis submitted for the degree of Doctor of Philosophy (Sc.) in Biophysics, Molecular Biology and Genetics 

  Podder, Soumita, Auth; Ghosh, Tapash C., Supervisor (2012)

• Structural and Functional Studies on Proteins From Vibrio cholerae – PIMT and HlyU 

  Pal, Aritrika. Auth; Chakrabarti, PinakPani, Supervisor (2014)

• Studies On The Role Of Protein Structural Disorder On The Evolutionary Features Of Prokaryotic And Eukaryotic Genomes 

  Panda, Arup. Auth; Ghosh, Tapash Chandra, Supervisor (2015)

• Studies on Eukaryotic Protein Evolution: Insights from the Protein-Protein Interaction Network and Protein Complex Assembly 

  Chakraborty, Sandip, Auth; Ghosh, Tapash Chandra, Supervisor (2015)

• Faculty Publication List : Dept. of Bioinformatics, 2012-13 

  Na (Bose Institute, Kolkata, 2013)

• Faculty Publication List : Dept. of Bioinformatics, 2011-12 

  Na (Bose Institute, Kolkata, 2012)

• Synonymous Codon Usage in Lactococcus lactis: Mutational Bias Versus Translational Selection 

  Gupta, S. K.; Bhattacharyya, T. K.; Ghosh, Tapash Chandra (ADENINE PRESS, 2004-02)

  In this study codon usage bias of all experimentally known genes of Lactococcus lactis has been analyzed. Since Lactococcus lactis is an AT rich organism, it is expected to occur A and/or T at the third position of codons ...

• Correlations between genomic GC levels and optimal growth temperatures: some comments 

  Basak, S.; Mandal, S.; Ghosh, Tapash Chandra (ACADEMIC PRESS, 2005-02-25)

  Regarding the existence of any specific correlation between optimal growth temperature and genomic GC levels, Musto et al. [FEBS Lett. 573 (2004) 73] have recently performed analysis on 20 prokaryotic families and showed ...

• The compositional transition of vertebrate genomes: an analysis of the secondary structure of the proteins encoded by human genes 

  D'Onofrio, G.; Ghosh, Tapash Chandra (ELSEVIER SCIENCE, 2005-01-17)

  Fluctuations and increments of both C-3 and G(3) levels along the human coding sequences were investigated comparing two sets of Xenopus/human orthologous genes. The first set of genes shows minor differences of the GC(3) ...

• Investigation on the causes of codon and amino acid usages variation between thermophilic Aquifex aeolicus and mesophilic Bacillus subtilis 

  Basak, S.; Banerjee, T.; Gupta, S. K.; Ghosh, Tapash Chandra (ADENINE PRESS,, 2004-10)

  Base composition, codon usages and amino acid usages have been analyzed by taking 529 orthologous sequences of Aquifex aeolicus and Bacillus subtilis, having different optimal growth temperatures. These two bacteria do not ...

• Evolutionary forces in shaping the codon and amino acid usages in Bochmannia floridanus 

  Banerjee, T.; Basak, S.; Gupta, S. K.; Ghosh, Tapash Chandra (ADENINE PRESS,, 2004-08)

  Endosymbiotic relationship has great effect on ecological system. Codon and amino acid usages bias of endosymbiotic bacteria Blochmannia floridanus (whose host is an ant Camponotus floridanus) was investigated using ...

• Shannon's uncertainty principle and gene expression levels 

  Subramaniyam, V.; Gupta, S. K.; Ghosh, Tapash Chandra (CURRENT SCIENCE, 2004-04-25)

  Shannon's uncertainty principle has been applied to measure the degree of constraints in codon bias in the coding sequences of Escherichia coli, Saccharomyces cerevisiae and Haemophilus influenzae. Our study shows a high ...

• Structural Identification of the interactions of SoxA and SoxX during the oxidation of sulfur anions via the novel global sulfur oxidizing (Sox) operon 

  Bagchi, A.; Ghosh, Tapash Chandra (Academic Journals, 2010)

  In this study, we have tried to elucidate the structural basis of the involvements of SoxA and SoxX in the binding and in electron transport during oxidation of sulfur anions via the novel global sulfur oxidation cycle. ...

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